RnoALTA0038669-1/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007998 | Ssb
Description
Sjogren syndrome antigen B [Source:RGD Symbol;Acc:620804]
Coordinates
chr3:56100888-56101331:+
Coord C1 exon
chr3:56100888-56101083
Coord A exon
NA
Coord C2 exon
chr3:56101215-56101331
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
AGGAAGTCATGTTTTTACAGCAG
3' ss Score
2
Exon sequences
Seq C1 exon
GGAATAATTCTCTTCAAAGAAAAGGCTAAGGACGCACTTGAGAAAGCCAGAAGTGCAAATAATGGTAACCTACTGTTAAGGAACAAAAAAGTGACTTGGAAAGTACTAGAAGGACATGCAGAAAAAGATGCAATGAAAAAAATCACAGATGATCAACAAGAATCTCTGAACAAATGGAAGTCAAAAGGAGGTCATG
Seq A exon
NA
Seq C2 exon
CAGCTCGCAGATTTAAAGGAAGAGGGAAAGGTAATAGACCTGCTTATGCTGGGGCACCCAAAGGAAGAGGACAGTTTCAAGGAAGGAGGACAAGATTTGATGATGATGATCATCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007998-13-23,13-22,13-21,13-20,13-19-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=NA C2=0.943
Domain overlap (PFAM):
C1:
PF087776=RRM_3=PD(60.6=95.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTCAAAAGGAGGTCATG
R:
TCCTCCTTCCTTGAAACTGTCCT
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]