RnoALTA0038816-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27472204-27475425:-
Coord C1 exon
chr7:27475363-27475425
Coord A exon
chr7:27472262-27472287
Coord C2 exon
chr7:27472204-27472261
Length
26 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ACCCACCGGCTTTCTTCCAGACA
3' ss Score
7.48
Exon sequences
Seq C1 exon
GGCACTTGCGTGAGCTGTTCCACGAAACACTGGAGCAAATGCCCTGCTGACTCAAAGCCCGCG
Seq A exon
ACAATCTTCTCGTCCTGTTTCTACAG
Seq C2 exon
CAGCAGAGTACGGAACCTGAAAAGTGGCTGTGCCCGATATTGTAATGTGACTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-23-24,23-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGCTGTTCCACGAAACA
R:
TCCACAGTCACATTACAATATCGGG
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]