RnoALTA0039047-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5498444-5499914:+
Coord C1 exon
chr3:5498444-5498572
Coord A exon
NA
Coord C2 exon
chr3:5499835-5499914
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCTTCTCCGCTCCCCTGCAGAGG
3' ss Score
9.88
Exon sequences
Seq C1 exon
GCTGCATAAAGGAGGGTCAGTTTGAGCAGGTGGTCGTGCTGCTGCTGAGAAGCATCCAGCTATGTCCTGGCAGAGTACTTCTGGTGAACAATGCACTCCGCGGCTTGGCCAGCCTCGCAAAGGTGTCTG
Seq A exon
NA
Seq C2 exon
AGGAGATCCTGCCAGAGATGATGTCTGGAGGCATCAAAGACCTAGTCCAGGTGATCCGGGGGCGCTTTACCTCCAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911-21-28,21-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCATAAAGGAGGGTCAGT
R:
CAGACTGGAGGTAAAGCGCC
Band lengths:
209-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]