RnoALTA0039728-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45844937-45858105:+
Coord C1 exon
chr3:45844937-45845123
Coord A exon
chr3:45857842-45857973
Coord C2 exon
chr3:45857974-45858105
Length
132 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATTTTGATCTCTCATTTCAGCCA
3' ss Score
7.96
Exon sequences
Seq C1 exon
TGCACAGCCCTGAGTCAAGGCATCAGTCCTTGCTCCACACTGACAAGCAGCACCGCCTCTCCCAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAGAGCAAGGACAGTGGAATTATAG
Seq A exon
CCACAATTACCAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCTGATAACTGTTCCCCAG
Seq C2 exon
TGGCAGAAGAGGAGACTACTGGGTCGGCGGAGAGCGTACTGCCCAAGGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-32-17,32-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=NA C2=0.910
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCCTTGCTCCACACTGA
R:
ATAAGGGACCGGACCATCTCC
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]