RnoALTA0040634-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44424903-44426652:+
Coord C1 exon
chr1:44424903-44425082
Coord A exon
chr1:44426534-44426536
Coord C2 exon
chr1:44426537-44426652
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGCATACTTTTATTTTTCAGAAG
3' ss Score
7.2
Exon sequences
Seq C1 exon
CTAAAACCGACAGAGCTTTCAAGGCTTTTCTGGACGCGCGGAACCCCACGAAGCAGCACTCCTCCACGCTGGAGTCATATCTCATCAAGCCTGTTCAGAGAGTGCTCAAGTATCCTCTGCTCCTCAAGGAGCTCGTGTCACTGACTGACCATGAGAGCGAAGAACACTATCACCTGACAG
Seq A exon
AAG
Seq C2 exon
CTCTAAAGGCCATGGAAAAAGTAGCCAGTCACATCAATGAGATGCAGAAGATCTACGAGGACTATGGGACGGTGTTTGACCAGCTGGTGGCAGAGCAGAGTGGCACAGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-42-28,42-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.6=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGAGAGCGAAGAACACT
R:
CACCGTCCCATAGTCCTCGTA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]