RnoALTA0040635-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44430814-44431188:+
Coord C1 exon
chr1:44430814-44430901
Coord A exon
chr1:44431034-44431039
Coord C2 exon
chr1:44431040-44431188
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TCCTTCTTTTATTCCCCCAGTGA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGACTGAAAACAATTCCACCTGGGAGCTGATTCATACCAAGTCAGAAATTGAAGGACGGCCAGAGACCATCTTTCAACTGTGCTGCAG
Seq A exon
TGACAG
Seq C2 exon
CGAGAGCAAAACCAGCATCGTTAAGGTGATCCGTTCTATTCTGAGAGAGAACTTCAGGCGCCACATAAAGTGTGAGTTACCAATGGAGAAGACATGTAAGGACCGGCTGGTACCTCTTAAGAACCGAGTTCCTGTTTCAGCCAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-48-37,48-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCCAGAGACCATCTTTC
R:
GCGCCTGAAGTTCTCTCTCAG
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]