RnoALTA0041030-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000028254 | Tmem141
Description
transmembrane protein 141 [Source:RGD Symbol;Acc:1561492]
Coordinates
chr3:2844988-2845289:-
Coord C1 exon
chr3:2845223-2845289
Coord A exon
chr3:2845072-2845136
Coord C2 exon
chr3:2844988-2845071
Length
65 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTCCCACCCTGTCTGTCCAGCAG
3' ss Score
6.34
Exon sequences
Seq C1 exon
GGACTCGAGGAATATGCTGCCTGCCAGTCGAACGCCTTCATGAAAGGCGTTTTCACTTTTGTCACAG
Seq A exon
CAGGAGGCGCCAAGTTGGCAGGTGTGGCAGGTACCCTGACCAGCACTTTGCTTGGCTCTTGGCAG
Seq C2 exon
GCACTGGTGTGACTTTTGGCCTGCAGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGGGCTTCCTGGTGTCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028254-2-4,2-3,2-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(22.9=100)
A:
NA
C2:
PF151101=TMEM141=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCGAGGAATATGCTGCC
R:
CGGCAGACACCAGGAAGC
Band lengths:
151-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]