RnoALTA0041409-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9916046-9918108:-
Coord C1 exon
chr20:9918013-9918108
Coord A exon
chr20:9916189-9916191
Coord C2 exon
chr20:9916046-9916188
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTTCTCACATTACTTTGAAGCAG
3' ss Score
4.9
Exon sequences
Seq C1 exon
AGACCATCCAGCCCATCTGCCTGCCCAACTCTGAAGAGAACTTTCCAGACGGGAAATTGTGCTGGACCTCAGGATGGGGAGCCACAGAGGACGGAG
Seq A exon
CAG
Seq C2 exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCCGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGATGTGTATGGCGGTATCATTTCACCCTCCATGCTCTGTGCGGGCTATCTGAAAGGCGGTGTGGACAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165-10-10,10-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGGAAATTGTGCTGGAC
R:
TGAAATTAAAGGGACGGCCGC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]