RnoALTA0041421-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60126816-60128507:+
Coord C1 exon
chr11:60126816-60126952
Coord A exon
chr11:60128400-60128449
Coord C2 exon
chr11:60128450-60128507
Length
50 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TGTTTTGATTTTGCCGGTAGCTT
3' ss Score
5.51
Exon sequences
Seq C1 exon
GTACTGTGGCTCCTACATGGATCATGAGACGATTTTCCGGGTGCCCAGCCCCCTGGTCCACATCCAGCTCCAGTGCAGTTCCAGGCTTTCAGACAAGCCACTTTTGGTAGAATATGGCAGTTACAACATCAGTCAAC
Seq A exon
CTTGTCCTGCTGGATCTTTTAGATGCTCCTCCGGTTTATGTGTCCCTCAG
Seq C2 exon
GCCCAGCGCTGTGATGGAGTGAATGACTGTTTTGATGAAAGTGATGAACTTTTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145-20-19,20-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(30.5=68.1),PF0005713=Ldl_recept_a=PU(2.7=2.1)
A:
NA
C2:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGACGATTTTCCGGGTGC
R:
TCATTCACTCCATCACAGCGC
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]