RnoALTA0041911-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74558723-74560219:-
Coord C1 exon
chr16:74560149-74560219
Coord A exon
chr16:74558824-74558969
Coord C2 exon
chr16:74558723-74558823
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGGTATTTTGTATCTTGAAGAAT
3' ss Score
4.49
Exon sequences
Seq C1 exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTCGAAATAACAG
Seq A exon
AATTGCAAGGAGCCAGCTGACACACAGAAGAGGGACTGAGGCCCCGATCAGTAGTGGTCTCTTCTGACATGCCAAAATGGGTAATCTATCGCATGCCTTTCTGTCAGCCCTAAAAGAAAGTGTAATGGGTTTTCTCCTGTCTTTAG
Seq C2 exon
GCTTTATCTACCAAGAAGCGAATTGGATAATACCCATAAACAAAAAACATGGAAAATTTATGGTCCAAAGTTTGCAGTCGAGGTGTATTTTGAGGAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-33-39,33-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(17.0=100)
A:
NA
C2:
PF104094=PTEN_C2=PD(23.7=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTAAATACTATGATGACTGCC
R:
TTATCTCCTCAAAATACACCTCGACT
Band lengths:
170-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]