RnoALTA0043559-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046601 | Unc5cl
Description
unc-5 family C-terminal like [Source:RGD Symbol;Acc:1587368]
Coordinates
chr9:14494755-14497791:-
Coord C1 exon
chr9:14497678-14497791
Coord A exon
chr9:14495564-14495567
Coord C2 exon
chr9:14494755-14495563
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
ATTACCCCTGGCCCTTGGAGACA
3' ss Score
-3.34
Exon sequences
Seq C1 exon
GCTGCCCCCAGAGCTCTTTGAGCAGCTGCAGATGTTGTTGGAGCCCAGCAGTGTCACTGGGAATGACTGGCGCAAACTGGCCTCCCACCTGGGGCTCTGTGGCATGAAAATCCG
Seq A exon
ACAG
Seq C2 exon
GTTCTTGTCCTGCCAGCGTAGCCCCGCCGCGGCCATTCTGGAATTGTTTGAGGAACAGAATGGCAGTCTGCAAGAGCTGCACTACCTCATGACCTCCATGGAGCGGCTGGACTGCGCTTCTGCCATTCAGAACTACCTTAACCGGACTCCGGGGGACAGCCCTACCAGGTTGCGCGGAGGTACCTGGGAGAACTGTGGCCTAGAGCTGGATGAGAAATTCTAAGCAGGCTCCGCGGCCGTGCAGGGTGCTTCAAGAGGCCATGTCATGCCATGCCTTTGAGCTGGGGACCAATTCTGCAGTTCCAGGTGGATCGAGCTGGAACCCCCAGTGAGGCCAGATAGCCTTATCATCTGCCCTGCATCAGGATAACTCTGTATCCTACCGGCCAACTTTGCCCTGCGTGCAGGTTCGCTCTTGGTCAGTAGGGGGCGCGGGAGTCTGGGAGATGGCCACAGCTAAGCCAGCTTCCAAGATGCTGTTTAATTTTCTCGCGGACGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046601-10-11,10-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(39.7=79.5)
A:
NA
C2:
PF0053117=Death=PD(59.0=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTCTGTGGCATGAAAAT
R:
GCTCTTGCAGACTGCCATTCT
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]