RnoALTA0043632-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89324093-89327369:+
Coord C1 exon
chr14:89324093-89324158
Coord A exon
chr14:89327249-89327251
Coord C2 exon
chr14:89327252-89327369
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CTCTCACTTTTCGTTTCTAGCAG
3' ss Score
9.38
Exon sequences
Seq C1 exon
GTCCCGCTACAGTGAGAAAATGGCAGCTACAGGAACTGAAGCAAAGGACCTGGAAAACCATCACAA
Seq A exon
CAG
Seq C2 exon
TGACTGCCTCGTCCAGCTTTCAAATCCAAACATAGCCACGATGAAGGAAGACGTTCTCTACCATTTCAACCTCAGCACTAGCACACACGATTTCCCCGCTATGTTTGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972-11-7,11-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCTGGAAAACCATCACA
R:
GTGTGCTAGTGCTGAGGTTGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]