RnoALTA0043842-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257578758-257580924:+
Coord C1 exon
chr2:257578758-257579175
Coord A exon
chr2:257580784-257580827
Coord C2 exon
chr2:257580828-257580924
Length
44 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
TAAAAATTTAAATATTACAGAAT
3' ss Score
5.05
Exon sequences
Seq C1 exon
GATGCCCAGGAATTCCTTCGCTGTTTAATGGATCTGCTTCATGAAGAGTTGAAGGAGCAGGTCATGGAAATAGAGGAAGAGCCTCAAGCACTAACTTCTGAGGAGACAGTGGAGGAAGAGAAGAGCCAGTCAGATGTGGATTTTCAGTCCTGCGAGTCATGTAGCAGCAGCAGTGAGAAAGGGGAAAATGAGAGTGTCTCTAAGGGCGGCCCTGAAGACAGCACTGAGACCACCATGCTCATTCAGGATGAGGAGGACCTAGAGATGGCCAAAGACTGGCAAAAAGAGAAGATGTGCAACAAGAGCAACAAAGCAGATTCTGACGGAGAACCGGATAAAGACAGAGACACGGTGTGTGAAACAGTTGACCTAAACAGCCAGGAGACCGTCAAGGTGCAGATACACGGCAGAGCCTCAG
Seq A exon
AATATATCACTGATGTCCATTTGAATGACCTATCTACACCACAG
Seq C2 exon
ATCCTTCCATCAAATGAAAGTGTTAATCCACGTTTATCAGCAAGTCCTCCTAAGTCAGGCAATCTGTGGCCAGGATTGACACCTCCACACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294-13-16,13-15,13-14,13-13-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.917
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(26.3=100)
A:
NA
C2:
PF0044324=UCH=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACAGCCAGGAGACCGTCA
R:
GTGTGGAGGTGTCAATCCTGG
Band lengths:
138-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]