RnoALTA0044157-5/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127750032-127752057:+
Coord C1 exon
chr8:127750032-127750176
Coord A exon
chr8:127751533-127751899
Coord C2 exon
chr8:127751900-127752057
Length
367 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
ACCTCAAACTCTCTCTGTAGCCA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GCTTCCTGAGGAGATTTCCAGCATCCAGCCCCGACTGTTTGAGTGCTCCAGCCACTCGGGCCACCTGGTCCTCACGGAAGTGGTGTTCTTTGGCCAAGAGGACTTAGACAAGTATGACATCATGCTACTAGACACCTGTCAGGAG
Seq A exon
CCAAGGACTGCCTGGAACTGATCCTCCTGCCTCCACTTTGCCAGTGCTGTCATTAAAGACATGTGCCCCAACACCTGGCTCAGGGACTGAAGCGTGTGTTTTCCACTGCCAAGTCTTTAGTGCCAAGCACATGCTAGTTCTTCGTACTATTCATAGATTAGGTACATGCATGCATGCCTGTGACCTCAAGTGTTCATGGGTGTGTGGACACCATAACTTGCTGGGTTCTTGGACGGGTGGGCATGCATGCAGGCTTCTGAGGCCATCGGAGTTGGGCAGAGGTGGCTGTCGTGAGCAGTCCCTCCACCGGTCCAAGCCCAGGCCTCCTCTGTGACCCAGATCTTCCTGTGGCTTGGGGAAGCTGCAG
Seq C2 exon
GTGAATGGAAGAAAGCAGCAGTAGCCTGGGGCCATGAGTACCTGAGGACTCACCCAGCAGAGAGGAGCCTGGCCACACCCATCATTGTGGTCAAGCAGGGCCGTGAGCCTGCCACCTTTACTGGGTGGTTTGTCACCTGGGACCCCTACAAGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446-22-29,22-28,22-27,22-26,22-25-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.6=55.1)
A:
NA
C2:
PF0062617=Gelsolin=PD(62.8=79.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGAGGAGATTTCCAGC
R:
GTCCACTTGTAGGGGTCCCAG
Band lengths:
302-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]