RnoALTA0044693-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014102 | Wdr38
Description
WD repeat domain 38 [Source:RGD Symbol;Acc:1562587]
Coordinates
chr3:23294403-23294670:+
Coord C1 exon
chr3:23294403-23294450
Coord A exon
chr3:23294536-23294590
Coord C2 exon
chr3:23294591-23294670
Length
55 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGACACTGTGTTACTGACAGGGC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTCAAAGTCTGGGACTGCCTCACAGGGAAATGCCTTGAGACCCTAAAG
Seq A exon
GGCATGCTGGATGTGGCCCATGCCTGCATTTTCACTCCAAATGGCAAACTCTTAG
Seq C2 exon
TGTCAGGGATTGCTGACGCGACAAGATGACAAGTCTGCTGAAAGTCAAGAACTTCATCCATGTAACTTACCCACAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014102-19-11,19-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.3=25.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGTCTGGGACTGCCTCA
R:
GGCCTGTGGGTAAGTTACATGG
Band lengths:
126-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]