RnoALTA0045479-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8669811-8673207:-
Coord C1 exon
chr3:8673034-8673207
Coord A exon
NA
Coord C2 exon
chr3:8669811-8670020
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CCACCCTGGCCCAGGTGCAGCGG
3' ss Score
-2.13
Exon sequences
Seq C1 exon
CTGGTCATCACAGCCCTCAAGTGTCACAAGTATGACAAGAACATTCAAGTGACTGGCAGTGCCGCTCTCTTCTACCTGACCAACTCTGAGTACCGCTCAGAGCAGAGCGTCAAGCTGCGCCGGCAGGTCATCCAGGTGGTGCTGAATGGCATGGAGTCCTACCAGGAGGTGACG
Seq A exon
NA
Seq C2 exon
CGGAACTGCTGTCTGACCCTCTGCAACTTCAGCATCCCCGAGGAGCTGGAGTTCCAGTACCGCCGCGTGAACGAGCTCCTGCTTGGCATCCTCAGCCCCACCCGCCAGGACGAGTCGATCCAGCGTATCGCTGTGCACTTGTGCAATGCCCTCGTCTGCCAGGTGGACAATGATCACAAGGAGGCTGTGGGCAAGATGGGCTTCGTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832-21-14,21-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCCAGGTGGTGCTGAAT
R:
CTCCTCGGGGATGCTGAAGTT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]