RnoALTA0045531-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003455 | Zfp13
Description
zinc finger protein 13 [Source:RGD Symbol;Acc:1304577]
Coordinates
chr10:12909801-12912849:-
Coord C1 exon
chr10:12912729-12912849
Coord A exon
NA
Coord C2 exon
chr10:12909801-12909901
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTTTTTTTTTTTTACAGGAG
3' ss Score
12
Exon sequences
Seq C1 exon
ATGCCGGTGACCTTTGAGGATGTGGCTCTGTACCTCTCCCGGGAGGAGTGGGGAAGACTGGACCACACACAGCAAAATTTCTACAGAGACATACTACAGGGCAAAAATGGGCTGGCTTTGG
Seq A exon
NA
Seq C2 exon
GAGCTATGGAAATGGGGAAAATGGTGCCAACCCTGGCGGTTGCCACCCTAGAGGACACAAAACCCATAAGGACTAGGGCCAGATGGGCCCCGGGGGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003455-6-12,6-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCGGTGACCTTTGAGGAT
R:
CCCATCTGGCCCTAGTCCTTA
Band lengths:
208-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]