RnoALTA0045541-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70584974-70618347:-
Coord C1 exon
chr11:70618193-70618347
Coord A exon
NA
Coord C2 exon
chr11:70584974-70585050
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAC
5' ss Score
4.42
3' ss Seq
TTCATACTTTTGCAGGATAGAAG
3' ss Score
-1.11
Exon sequences
Seq C1 exon
GGAAGAGGAGAAAGGCGCAGGGGTGGGAGCTGTCGCCGGAGCTGCCACAGCAAAAGTTCTCTCCCCTCCCCCTCGCCCTCCTCGCCGGGCCCGTGGGAAGGTCGGAGCTGCGGCCGTCTGCAGTCAGTGACCGCGCGCCTCGGCGCCAGCCCGCG
Seq A exon
NA
Seq C2 exon
AAGAGAAGAATCAGTGGCTTGGAAATTTAGCCAAGTGATCTGGCGGGATGGGCTCATGCCTGACACACTTTATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789-1-5,1-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCTGCAGTCAGTGAC
R:
CATCCCGCCAGATCACTTGG
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]