RnoALTA0045543-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000001323 | Zfp157
Description
zinc finger protein 157 [Source:RGD Symbol;Acc:1359435]
Coordinates
chr12:18464781-18468418:-
Coord C1 exon
chr12:18468309-18468418
Coord A exon
NA
Coord C2 exon
chr12:18464781-18467555
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ATTCTTTTGTCTTAAGGCAGAAA
3' ss Score
0.91
Exon sequences
Seq C1 exon
GTGTTCTTGAAGTGTATACTCCAGATGAGAGTTGCCTGGAAAATCCAGAGAGTCATATGTGGCCAGTGGGAAGCATCAGCAGAAATCTTTCAAATAAAGAGATGATTGAA
Seq A exon
NA
Seq C2 exon
AAATGAAGGTTCAACTGGAACTTTACCGAGGTACAAAACCCTGTGAATGTAAACCGTGTATGAAAATGGTTAGCCTGCCATTGCAGCGCAACGAGCAGCATGCCTACTATGCACGCGTGAAACCCTACGAATGGAAGGAGTGTCAGAAAGCCTTCTGTTACAAGTCAGCGCTAACTCAGCACCAGAGACCTCGTACAAGATTGAAGATCTATCAGTGTACAGAATGCAGGAAAGCGTTCCCCTCCAAGTCAGAACTCACTGTGCATCATAGAATTCATACTGGTGAGAAGCCCCATGAATGTGACGAATGTGGTAAAGCTTTCTATCGTAAGTCAACCCTTACCGTACATCAGAAGACTCATAGAGGTGAGAAACCTTATGAATGTAAGGAGTGTTGCAAAGCTTTCTATTATAAGTCAACCCTCACTGAACATCAGCGAATTCATACCGGCGAGAAGCCTTATGTGTGTAAAGAGTGTGGCAAAGCTTTCTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001323-7-8,7-7,7-6-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATATGTGGCCAGTGGGA
R:
CACAGGGTTTTGTACCTCGGT
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]