RnoALTA0045567-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77592016-77598549:+
Coord C1 exon
chr4:77592016-77592039
Coord A exon
chr4:77598160-77598164
Coord C2 exon
chr4:77598165-77598549
Length
5 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TTGTATCCTCAATCCTACAGCAC
3' ss Score
7.37
Exon sequences
Seq C1 exon
ATGGCGGAGTCGACGCCTGCTCGG
Seq A exon
CACAG
Seq C2 exon
GAGGAAAAGGCGCTCCACACCGTTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCAGTACTTCCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCTGTGGAGAAGAAGATGGAATCCCAGGCTGCCCGACTGCAGAGCCTGGAGGGACGCGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTACTGCAGGAGTACGGCCTGCTGCAGCGACGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGACTGCCCCCAGGCAGCAAGGGGGAGACCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.285
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF124173=DUF3669=WD(100=61.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGACGCCTGCTCGG
R:
TGTGGTCTGGAAGTACTGGCT
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]