RnoALTA0045586-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21457148-21457931:-
Coord C1 exon
chr8:21457849-21457931
Coord A exon
chr8:21457257-21457274
Coord C2 exon
chr8:21457148-21457256
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
AGCATGTGTGGGTGGTTTAGGAT
3' ss Score
4.36
Exon sequences
Seq C1 exon
AGAGTCTGTTCTCTGATGACCAAATCTGCAGTCAAGAAGAAGAGACAGAGGGAGAAAGCACGCTGGGAGAAGACTGTGATAAG
Seq A exon
GATGTGGTGACTTTTCAG
Seq C2 exon
GATGAGGCTGTGGATTGCGCTCAGGAAGAGTGGACCCTAAAGGATCCGACTCAGAGCAGCAGACCTGGTGATGTGGCAGTGGAGGACCACACAAACTTGGCCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGGGAGAAGACTGTGAT
R:
CACTGCCACATCACCAGGTC
Band lengths:
105-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]