RnoALTA0045594-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21517571-21519013:-
Coord C1 exon
chr8:21518714-21519013
Coord A exon
NA
Coord C2 exon
chr8:21517571-21517609
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TTGACGACTCAGAGCTGGAGAAT
3' ss Score
-18.42
Exon sequences
Seq C1 exon
GTCCTTTTTGAACATAGAAATGTCTTTTCTGAGGTGCTAGAGATTGTACTGAGAGACTTGCATGTTAAGCTACATCCTTCCCTTCCCCATATTTGAATTTTAACTCAACTTTGAAAGAATTGCCTTCCTCTCACTTGAACTATGATTTCCTTGGCCATAGGAAAGTTTGTTATCGCCTGTTTGAGTCCCTTCCACTCATGTATGTTTCTGTATATGCAGGATGTCAGTTCTTCATTCCTAGTCTGACTCCCTGGCTAAAACAAGAAGAGTTAGGGGTGGCAGAAAGTGCTCTCCCTCAGC
Seq A exon
NA
Seq C2 exon
AATTATTTTAGGATGCAAAGTTCCAGTGCAACAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037-7-14,7-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCTTCCACTCATGTATGT
R:
TGCACTGGAACTTTGCATCCT
Band lengths:
148-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]