RnoALTA0045617-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003218 | Zfp286a
Description
zinc finger protein 286A [Source:RGD Symbol;Acc:1561950]
Coordinates
chr10:49195137-49196177:-
Coord C1 exon
chr10:49196123-49196177
Coord A exon
chr10:49195209-49195222
Coord C2 exon
chr10:49195137-49195208
Length
14 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TACCACTTTCTCGCCCTTAGCAC
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATGGAAAAGGTGGTGACCATGGAGACGGATTTGGCTGAAGTGCCCCAGAAAAGAG
Seq A exon
CACTCTCTTCCCAG
Seq C2 exon
GATTCTCTCCTTTCCCAAGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACAGCCAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003218-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.672
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGATTTGGCTGAAGTGC
R:
GGTCTGGCTGTGAGTCTCAGA
Band lengths:
101-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]