RnoALTA0045628-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19886382-19887242:+
Coord C1 exon
chr8:19886382-19886412
Coord A exon
NA
Coord C2 exon
chr8:19887127-19887242
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTCCTCTCTGGGCTCTGCAGATA
3' ss Score
8.32
Exon sequences
Seq C1 exon
ATGGCTACCATCTGTCTGTCTCCCAAGTTTG
Seq A exon
NA
Seq C2 exon
ATAACCAGGAATCAGAATTTCCTCTTCCATCAAAATGTGATTCTTGTCATCAGAGTTTGAGTTTGTTTGCTTGCCGTGCTCCAGAGCCTGATACACCAGCTCATGTTTATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684-6-7,6-6,6-5-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCATCTGTCTGTCTCCCA
R:
CACGGCAAGCAAACAAACTCA
Band lengths:
106-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]