RnoALTA0045700-2/2 @ rn6

Alternative 3'ss

Gene

ENSRNOG00000033624 | Zfp426

Description

zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]

Coordinates

chr8:21478383-21480301:-

Coord C1 exon

chr8:21480219-21480301

Coord A exon

chr8:21479640-21479642

Coord C2 exon

chr8:21478383-21479639

Length

3 bp

Sequences

Splice sites

5' ss Seq

ACGGTAAGA

5' ss Score

10.65

3' ss Seq

GTGTTTATCCCTCTTATCAGCAG

3' ss Score

6.58

Exon sequences

Seq C1 exon

AATGGAAAATACAGCTCGAGACCCAGTGTTCAGCATCCCAGCAGGAGCTTTTGAGGGGTAACATATCCAACGGGATGCAAACG

Seq A exon

CAG

Seq C2 exon

ACAGGAAGTGACACAGGAAGGGGCCTCTGTGACGGGACACAATATGGAGACTTCTTCAGTGAACTCTCGCCCCTTAGGACGGTTATGAAAACTCGACCTGCACAGGATAATTATGATAGTAGTCAATGCAGGAAAGACTTTCTAATGCTTCAGAGGAAAAAGTGTGCTGGTGAGAAACTTTCTGAGTTCAATCAGAGTGAAGAAACCGGTGCGATCCCAGGTAAAGCTTATCAGAAAATGGCCACACAAGAGAAATGTTTTGAATGCAGTGACTGTGGGAAGTCCTTTATGAATCAGTCACATCTTCAGACACATCAGAGAACTCACAGTGGAGACAAACTTTATGAATTGAATGAGTGTGGGAGAAGTTTTATAAACTCAAGACTTGCTGTGCTTATAGAAACTCTCAATGCAAAGAAACCTCACAGATGTAAGGAGTGTGGGAAAGGCTACCGATACCCTGCGTATCTAAACATTCACATGCGAACCCACACTGGGGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000033624-11-10,11-9-2/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.286 A=NA C2=0.076

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5)

Main Inclusion Isoform:

ENSRNOP00000069966