RnoALTA0045718-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043341 | Zfp51
Description
zinc finger protein 51 [Source:RGD Symbol;Acc:1560046]
Coordinates
chr1:61522298-61526943:+
Coord C1 exon
chr1:61522298-61522377
Coord A exon
NA
Coord C2 exon
chr1:61526857-61526943
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CCTTTGATGTGAAAGGGCAGCAG
3' ss Score
-4.42
Exon sequences
Seq C1 exon
CTCACTGATCACCCAGACCTGCCCACCCGTGGAGCAGAACAAGCTCCCTAGAAGACCAAAGACAGTAGCTAAGGATCAAG
Seq A exon
NA
Seq C2 exon
CAGGTCATCTACTCATTGCTCCTGAAAGACAAACCCAAAGAAGAGAAACAGAAAGAAATGGCTCATTCTCCCGTAAACATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043341-2-5,2-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGTGGAGCAGAACAAG
R:
TGGGTTTGTCTTTCAGGAGCA
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]