RnoALTA0045748-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77973843-77977245:+
Coord C1 exon
chr1:77973843-77975694
Coord A exon
chr1:77977169-77977186
Coord C2 exon
chr1:77977187-77977245
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTGGCCTCTGATGGCTCAGATA
3' ss Score
4.98
Exon sequences
Seq C1 exon
CAGTGTCCAGAGAAACATCTCCTGGGGGCCCTAGGCGAGACACAAAAGGAGGCCCCAAAGTGGCCTCTGCACCACCATCCCTCACAGGGCCAGCTCTGCACCCCTCCCGGAATCCAGACAACTCTTCCTTGGCCAAAGGGACCTTGGACCTGGGAGACATTATCCCCAGTGCCGGCTCAAGGCAGTCCCAGTTAGGTGGAGATGAGCCATCTGGAACCCAGCTGGTTGGGAAACAGGGGCAAGGAGAGAATGGCCTGGCTTCAGGGGCCATGAGAGGTGAGAAGGGCCCAGCCTGCCCCCGAGGTGGAGGCTACAGGCTCTTCTCAGGGCACCCCAGGGCCCAGAGATTCTCAGGTTTCCGGAAGGAGAAAGTAAAGATGGATGTGTGCTGTGCAGCTTCTCCCAGCCAAGTGGCCATGGCCTCCTTCTCATCAGCCGGGCCCCTGGCAGATCCACCCAGAGACATGAAGTCCAAGCTGACAATCTTCAACAGAATCCAG
Seq A exon
ATATCTTCTCATCCCCAG
Seq C2 exon
GGTGGAAACATCTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-6-6,6-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(30.4=1.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCCTCCTTCTCATCAGC
R:
CACTGGATGGGGGAGTCTGTA
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]