RnoALTA0045766-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000051867 | Zfp600
Description
zinc finger protein 600 [Source:RGD Symbol;Acc:9286049]
Coordinates
chr11:38727048-38728358:+
Coord C1 exon
chr11:38727048-38727130
Coord A exon
chr11:38728236-38728273
Coord C2 exon
chr11:38728274-38728358
Length
38 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TATTTTTGTTCCATGAAAAGTTC
3' ss Score
3.48
Exon sequences
Seq C1 exon
TTCTATGCTTGTGGGCAACGGAAGTACGGCAGTCAGCTGCACAGCGGCGGGAACCGCAGCTTAGAGGTCCTGGAACCTCCCAG
Seq A exon
TTCTGGGTGCTTTCTGAAGACTCTTTCCCATATGCAAG
Seq C2 exon
GGTCACACTCCTCAGCCAGTTCTGCTCACCTATGAATCTGAGAGCCCTGGATGGTGAAGACAGGAAACTGTAGCAACTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051867-0-4,0-3,0-2,0-1-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTTGTGGGCAACGGAAG
R:
TAGGTGAGCAGAACTGGCTGA
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]