RnoALTA0045773-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81149478-81152384:-
Coord C1 exon
chr1:81152334-81152384
Coord A exon
chr1:81149508-81149578
Coord C2 exon
chr1:81149478-81149507
Length
71 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
3' ss Seq
ACCTTCTCTGTTCTCTTTAGGAA
3' ss Score
12.46
Exon sequences
Seq C1 exon
CTTGAGTCTCTTCTCTCCCATACCTTCCTCGACTGATCCCTGGATCTGGAG
Seq A exon
GAAGGAGAAGATTGTCTCCAGCTTGGTGTCAAGGATGACTGTCCTATTTCATGGCTTCTCTCCTTCCACAG
Seq C2 exon
CCTGACCTCTCGACAAGGACTGAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGTCTCTTCTCTCCCATACCT
R:
TCCACTCAGTCCTTGTCGAGA
Band lengths:
79-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]