RnoALTA0045849-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000029043 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:87655729-87656372:+
Coord C1 exon
chr1:87655729-87655849
Coord A exon
NA
Coord C2 exon
chr1:87656286-87656372
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CGTTCTCTTTCTTCGAGTAGGAC
3' ss Score
6.86
Exon sequences
Seq C1 exon
TGTGTGTTCAGGGATGTGGCTATTGAGTTCGGTAAGGAGGAGTGGGAGTGCCTGGGCCCTGAGCAGAGGTCGCTATACAGAGACGTGATGCTGGAGAACTACAGCCACTTTGTGTCCCTGG
Seq A exon
NA
Seq C2 exon
GACTTGCCATTTCTAAGCCATCAGTAATTTCACTACTGGAGCAAGGCAAAGAACCATGGAGAGTGGAGCAAGCCGGGTGGTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029043-2-7,2-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGACGTGATGCTGGAGA
R:
TGGTTCTTTGCCTTGCTCCAG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]