RnoALTA0045992-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144942183-144969360:-
Coord C1 exon
chr5:144969315-144969360
Coord A exon
chr5:144942687-144942720
Coord C2 exon
chr5:144942183-144942686
Length
34 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CTGTTAACTTGTCTAAACAGTTT
3' ss Score
8.57
Exon sequences
Seq C1 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
Seq A exon
TTTCTTACTTTTTAAGGTGGTGTCATGGATACAG
Seq C2 exon
AAATGTCTGAAGACACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAGTCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAGCTCATACTGATGGTAGTTTGGAGATAGAGAGAAGAGCTTCTCATCATGAATCAGACAATGAAAATGAAATACAAATTCAAAGTCAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGCGAAAAACGATTGGATAAACCCCATAAAGGTTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-10-7,10-6,10-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGAAAAGTGATGCAGTTT
R:
CCTGTTTGACTCGGCATTCCA
Band lengths:
120-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]