RnoALTA0045994-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144924644-144932199:-
Coord C1 exon
chr5:144931944-144932199
Coord A exon
chr5:144924817-144924818
Coord C2 exon
chr5:144924644-144924816
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAAGTATAG
5' ss Score
-1.06
3' ss Seq
TATCTCTGTTGTCATTTTAGAGA
3' ss Score
8.45
Exon sequences
Seq C1 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAAATGCTTCCTGCAGTTCCAGCCACAGCTATTCGAGTTTCCTGCTCTGGTTGTAAAAAAATCCTCCAGAAGGGACAGACGGCTTATCAGAGGAAAGGGTCAACTCAGCTTTTCTGCTCCACCCTGTGCCTCACGGGATACACAGTGCCACCTGCCCGCCCACCGCCGCCTCTCACCAAGAAGACTTGTTCCAGTTGCTCAAA
Seq A exon
AG
Seq C2 exon
ACATTTTAAATCCAAAGGATGTGATCAGTGCCCAATTTGAAAATAGCACCACCAGTAAGGATTTTTGCAGTCAGTCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAATACAAATAGCATTTCAACCAAGTGCAGCATGTGTCAGAAGAACGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-25-18,25-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
A:
NA
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGATACACAGTGCCAC
R:
TGGGCACTGATCACATCCTTTG
Band lengths:
106-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]