RnoALTA0045995-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144915073-144916596:-
Coord C1 exon
chr5:144916446-144916596
Coord A exon
chr5:144915210-144915213
Coord C2 exon
chr5:144915073-144915209
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTGTTTCTCTTTTAACTAGCAA
3' ss Score
6.71
Exon sequences
Seq C1 exon
ATGGCCAAATGTGATGGTTGCAAGAGACAGGGTAAACTCAGTGAGTCTTTGAAATGGCGAGGTGACATAAAACACTTTTGTAACCTGCTTTGCATCTTGATGTTCTGTCATCAGCAAACTGTATGTGACCCACCTTTACAAAACAATACAG
Seq A exon
CAAG
Seq C2 exon
TATTTCCATGGTTCAAGCTGCTTCTGCGGGCCCCCCGTCCCTCAGAAAGGACTCGACTCCCGTTATTGCTAATGTGGTCTCTCTAGCAAGTGCTCCTGCTGCACAGCCCACAGCAAACGCTAACAGCGTCTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-34-29,34-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(91.9=66.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACTGTATGTGACCCACCT
R:
AACGGGAGTCGAGTCCTTTCT
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]