RnoALTA0046088-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000053518 | Zscan26
Description
zinc finger and SCAN domain containing 26 [Source:RGD Symbol;Acc:727885]
Coordinates
chr17:45188248-45200087:+
Coord C1 exon
chr17:45188248-45188398
Coord A exon
chr17:45199903-45200013
Coord C2 exon
chr17:45200014-45200087
Length
111 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
CTTTGCTTATATATTCTTAGGAG
3' ss Score
7.2
Exon sequences
Seq C1 exon
AGACGTGAGACTGACCCTGCGGCCAGGGCACCAGGACTTACGGTGATCCGGTTCCAGCGGAGAGAGAACAGCAAACTTGTGATTCTTGAACGGTGGTTCTGGCTGGTACACAGAAACTTCCAAACCTCGCAGCTGGGAAGACCAGAGGCTG
Seq A exon
GAGTAGCTGCTTTGGAGAACACAAATGGCTAGAAGGAAACAACCCTCAGGAAAGATCACTTGTTGCTGTTGTTACTACTAGCACAGCTGTTTCTGTGACTTGTGTTTTTAG
Seq C2 exon
GAGTCTCTCAGGATACAGTCAAAAGAAAGGTCTCCAAAACAAAGTGCCTGAAGCAAGGGATGGCACTGGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053518-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGTGAGACTGACCCTGC
R:
CAGTGCCATCCCTTGCTTCAG
Band lengths:
219-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]