RnoALTD0001029-4/5 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024617 | AC099444.1
Description
NA
Coordinates
chr4:78262347-78264654:+
Coord C1 exon
chr4:78262347-78262447
Coord A exon
chr4:78262448-78262608
Coord C2 exon
chr4:78264496-78264654
Length
161 bp
Sequences
Splice sites
5' ss Seq
AGTGTCAGT
5' ss Score
-0.52
3' ss Seq
CTCCGCTTCTGCTTCTCCAGGGG
3' ss Score
8.98
Exon sequences
Seq C1 exon
CCTTTCTCCACCAGGCAAGTTGTTAGCCGGTTAGACCTCCCAGCCTCACGGGGCTGCTGTGCGGAAGCGACTAAGCTGGCGACTGCGGCTCTGCAGCAGAG
Seq A exon
GTAAGGGCTCCAGAGGCGGCGCCACGTGAGTCCCAGACTAGAGCCCAAGATCAGGAGGGAGGTTACCGTATTTATCGAGGCCAGTGGGGGACCCTTGGTGCCGGGTCACTGCGGGCGCGCTCCCGTATTTGCCCGGAGCCGTGCAAGTCCTTTCTGGGAGT
Seq C2 exon
GGGCTGGTGATTGCATCCGGAAGTGCCCATGACAGAGCTGGTGTCCTCCAGGGGAGGGTCCCCTATAGGGGACAGGGAGGAGGGTCTGGGAGACGATCAAGGCCTGGTTATCCACCACCCAGCGGAGGAACAGTCCCACCGCTGCCCACTGTGCGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024617-0-0,1-0,2-0,3-0,4-0-4/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.698
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCTCCACCAGGCAAGTT
R:
AGCGGTGGGACTGTTCCTC
Band lengths:
244-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]