Special

RnoALTD0001131-2/2 @ rn6

Alternative 5'ss

Gene
ENSRNOG00000056767 | AC136588.3
Description
NA
Coordinates
chr14:85881062-85881809:+
Coord C1 exon
chr14:85881062-85881096
Coord A exon
chr14:85881097-85881107
Coord C2 exon
chr14:85881775-85881809
Length
11 bp
Sequences
Splice sites
5' ss Seq
TTTGTATCC
5' ss Score
-6.58
3' ss Seq
ACCTCAAACTTTCATCAAAGGTT
3' ss Score
5.91
Exon sequences
Seq C1 exon
ATTTAGGTGAACTAGATCGATTTTAACTTGTCTAG
Seq A exon
GTGGGCGATTT
Seq C2 exon
GTTGAAGAAATAACCAAAAAGCAGCCGGGTGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056767-30-33,31-33-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
3' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
NA:- 
Human
(hg19)
No conservation detected
Mouse
(mm10)
NA:- 
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]











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