RnoALTD0001260-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98320816-98322447:-
Coord C1 exon
chr10:98322368-98322447
Coord A exon
NA
Coord C2 exon
chr10:98320816-98320871
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATATGGTTTTTCGTACACAGTTA
3' ss Score
6.95
Exon sequences
Seq C1 exon
GTACTCTTCTCTGATGGTCTATAAACTGCCCAGGGAAGATGTGCAACCTTTATCCCAGGCCTTTTTCAAATTAGAGACAG
Seq A exon
NA
Seq C2 exon
TTAAACAGAGCTTTGACCTGGAGGAGTACAGCCTCTCACAGTCCACTCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147-60-65,61-65-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTGATGGTCTATAAACTGCCC
R:
CTGCTCCAGAGTGGACTGTGA
Band lengths:
130-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]