RnoALTD0001457-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64573646-64589494:-
Coord C1 exon
chr10:64585417-64589494
Coord A exon
chr10:64585397-64585416
Coord C2 exon
chr10:64573646-64573705
Length
20 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
CGCTCTCTCTGTCTTTGCAGCTG
3' ss Score
12.58
Exon sequences
Seq C1 exon
GGTAATGTGTGCACTGCCTGCAGCGGGCTGTGGCGCTCTCCCGGTTCGCACTCCGTGTCCCAGGATCTGCAGCTCACAGGAGAGGGCAGCAGGCAGCCTGCGGGAAGGCACTGGGCCCTAGTGGTGCCTCAGACTCTGCTGCTTCCCGGCTGCAGTCTCCAGGGAGGGGGAAGGAGGAGGAGGAGGAGGAGGACGCAGAGGGAGGGGAGGAGAAACCGGAGGCCCACACCCGCTGCTTTGGGACTGCTCCACTAACAGCCCGGCTAAGCACTCGGGCACAGACAGCAGCTCTCTCCAGAGCCGCTTGTGCGCTTCTCCGCTTTTCTGCCTGGATCTGGCCCGGCAGGCTGACCGCTGGCATGTGGACATCCTGCCTCAGCCCGACTGCAGCCTGAAAGCAGTGTGTGAATCCCTGGAGCACTGCTGCCTGGATCAGCTAGAGGAGCCGGGGAACAAGCGAATGCCCAATACAGGCGCCCGGCTCTGGGGCAGAGTGCGCA
Seq A exon
GTAAGCTGCTTCGCCACAAG
Seq C2 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGATGTGATTGAAATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-42-35,43-35,44-35-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGATCAGCTAGAGGAG
R:
TCCGTATGCCAGTTCTTGCTT
Band lengths:
117-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]