RnoALTD0002100-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018421 | Aen
Description
apoptosis enhancing nuclease [Source:RGD Symbol;Acc:1305051]
Coordinates
chr1:140584326-140588151:+
Coord C1 exon
chr1:140584326-140584426
Coord A exon
NA
Coord C2 exon
chr1:140587564-140588151
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTTGTGCTCTCTCTTCAGCAC
3' ss Score
10.5
Exon sequences
Seq C1 exon
ACCAATAGACAGGCAGCCGAAGCCGGGCATGTCCGGGCAAGCAACTACTGCTGCCGTCAAGGCTTCCACGTGAAAGCCGCAAAGTGCGGCCCGGTCTTCAG
Seq A exon
NA
Seq C2 exon
CACACTGCCTCGTGGGCAGACAGCCTCCAGAGCTTTCTTACCGCTGCCTGTGAGCTGGCTGGCATGGTGCCCAGGGAAGTCCCTGAGTCTTCCCTCACTAGCCTGAAGACCAAGGATGTGGCTCGGAGGAGACACAAAAGGAGAAGCCGGCAGCACCAGCGGTTCATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGTCGTTGAGCATGGTACCAGGGCCAGGACTCTGCCCTCTGCCCTCCCCAACACAGACGCCAGCAGGCACAGAGGCTTCAGGCAACAGGAAACAACGTACCAAGGCCAGGTCTGGCAGCAAAGGCCTGTGTAGCAAAAGGCCTGTCCCCAGAGAAGCCCCAAGCTCTGGGCCCAGCAAGTATGTGGCCATTGACTGTGAGATGGTGGGTACCGGCCCCCAAGGGCGAGTGAGTGAGCTAGCCCGCTGCTCCGTGGTGAGTTACAGTGGTGATGTTCTCTATGACAAGTACATCCGGCCTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018421-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.583
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=39.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATAGACAGGCAGCCGAAG
R:
TCAACGACTCCTGCTCCTGAA
Band lengths:
305-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]