RnoALTD0002678-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73770491-73771435:-
Coord C1 exon
chr16:73771211-73771435
Coord A exon
NA
Coord C2 exon
chr16:73770491-73770645
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
CCATGTCTGCTCTTCCTTAGCCC
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTTTCTGGTGAGCTTCATGGTCGATGCCCGGGGAGGATCCATGAGAGGAAGTCGTCATAATGGCCTAAGGGTGGTGATCCCTCCCCGGACATGCGCAGCACCCACTCGCATCACCTGCCGCCTGGTTAAGCCCCAGAAGCTAAGCACACCGCCCCCGCTGGCTGAGGAGGAGGGCCTAGCCAGCAGGATCATTGCACTGGGTCCTACGGGGGCCCAGTTCCTTAG
Seq A exon
NA
Seq C2 exon
CCCTGTGATCGTGGAAATCCCCCACTTTGCCTCCCATGGCCGCGGGGACCGTGAGCTGGTGGTTCTGAGGAGCGAGAACGGCTCCGTGTGGAAGGAGCACAAGAGCCGCTATGGAGAAAGCTACCTGGACCAGATCCTGAACGGCATGGACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-38-37,39-37-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=FE(71.4=100)
A:
NA
C2:
PF0079115=ZU5=PD(26.7=52.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGAGCTTCATGGTCGA
R:
GGTAGCTTTCTCCATAGCGGC
Band lengths:
347-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]