RnoALTD0003505-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014317 | Arpc5l
Description
actin related protein 2/3 complex, subunit 5-like [Source:RGD Symbol;Acc:1308867]
Coordinates
chr3:23306103-23306879:+
Coord C1 exon
chr3:23306103-23306181
Coord A exon
chr3:23306182-23306338
Coord C2 exon
chr3:23306703-23306879
Length
157 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGCT
5' ss Score
3.16
3' ss Seq
ACTTTTTTCTTCCTTTGTAGGAA
3' ss Score
12.73
Exon sequences
Seq C1 exon
GGGACATGCTTCGGGCATTCCATGCAGCCTTGCGGAACTCTCCAATCAACACCAAGAATCAAGCTGTGAAGGTAAAGAG
Seq A exon
GTTGTGCTGCAGCTGTCAGGACCAGGACTTCGTGTCCTTAGCAGCAATTTCAACTCCCTGGCGTCTGGACAGTAACTGCATCACTGGGAGTGTGCTGCTACTTGGCGTTCCCTTTTCACCGAAACCACTTGCTATTTCTCAGATACTGGTGCAGTAG
Seq C2 exon
GAACGAGCCCAGGGTATAGTCCTGAAAGTACTCACAAACTTCAAGAGCAGCGAGATTGAGCAGGCTGTGCAGTCACTGGACAGGAATGGCATTGACTTGCTAATGAAGTACATTTATAAAGGGTTTGAGAAGCCCACAGAAAATAGCAGTGCAGTGTTACTCCAGTGGCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014317-2-2,3-2,4-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF046999=P16-Arc=FE(39.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTGCGGAACTCTCCAA
R:
ATGCCACTGGAGTAACACTGC
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]