RnoALTD0004072-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40006917-40089347:-
Coord C1 exon
chr15:40089244-40089347
Coord A exon
chr15:40089240-40089243
Coord C2 exon
chr15:40006917-40007005
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTGACTTGTGTTTCTTGCAGGCA
3' ss Score
10.28
Exon sequences
Seq C1 exon
TTCAGTCACCTGGCAGTGTGGGGAAGCATGCTGATCTGGTTGGTGTTCTTTGGTGTCTATTCAACCTTCTGGCCGACCATCCCCATCGCTCCTGACATGAAAGG
Seq A exon
GCAG
Seq C2 exon
GCAACTATGGTCCTGAGTTCTGCCCACTTCTGGTTGGGTTTGCTCCTGGTTCCCACTGCGTGTTTGATCGAGGATGTGGCGTGGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-58-59,59-59-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=PD(25.0=80.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCTGATCTGGTTGGTG
R:
TGGGCAGAACTCAGGACCATA
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]