RnoALTD0004354-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46016809-46025826:-
Coord C1 exon
chr3:46022118-46025826
Coord A exon
NA
Coord C2 exon
chr3:46016809-46017019
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TGAAATTTATTCCACAAAAGGGA
3' ss Score
1.5
Exon sequences
Seq C1 exon
ACTATGTCAAAATTTAAGTGAAGAACCACAATATAATGGTTATCTTTCAAACAAGTAAAACAGATGCCCTTAATTCAAGAGAAGTCGGCTATAAAAGGAATGAGACCAAACAAACTTTTACTCATCAAGTGTTTTGTCTGCGTCCACAGATACAGTGAAAGCTCAAGAGGGTCAGCAAATGGTAGCCTTGTGCTAGCCAGAGTTCAAATACTCTTTATCAGCTTCCATAAAATTCCACCTTTTAGGGGTACTTGGCGTCCTCTAACAAGCAGAAATGCCCTGAAGGCCAGGCTCTGTGGTCAGCCAGCTGCCTGTGCTCACACTCTGTCAGGCTGGCCTCCATGCCGGCCTGGAAAGGATGCCAGTGGATCTGTCTTTACAGAGTTCTGTTCCGTTGCATCATAAAAACGTGTCGATCCTTACGTTTGTCATCAGTTTTATTTTATTTCACTGGTTTTGGTTACCAAAGTAATAGAAATGTTTGTGCTGGCTTGGTTTTG
Seq A exon
NA
Seq C2 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCGAAGAGGAAGACCACCCAATCCAGATAGACCAAGAGCAAGAGAGGAATCCAGGATGAAACGCCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCCGAATTCCTAGATAACACAGATGCAAAACTACTAAGGAAACTGCAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-29-29,30-29-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.620
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0142914=MBD=PD(3.8=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCACACTCTGTCAGGC
R:
CGTCCATTGCCCTGATACGAG
Band lengths:
248-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]