RnoALTD0004459-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14423629-14426263:-
Coord C1 exon
chr20:14426128-14426263
Coord A exon
chr20:14426124-14426127
Coord C2 exon
chr20:14423629-14423763
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CATTTCTGCGTTCTTTCCAGATA
3' ss Score
10.42
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTACGCCAGTGTGTGGAGGAGATTGAGCGCCGGGGCATGGAGGAAGTAGGCATCTACCGAGTGTCCGGAGTGGCCACGGACATCCAGGCCCTGAAGGCAGCCTTTGAT
Seq A exon
GTCA
Seq C2 exon
ATAACAAGGACGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCTGGCACGTTGAAGCTCTACTTCCGAGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-29-26,30-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGCATCTACCGAGTGTCCG
R:
CCATCTCGCTCATCATCACGG
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]