RnoALTD0004699-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3447241-3462585:-
Coord C1 exon
chr14:3462485-3462585
Coord A exon
NA
Coord C2 exon
chr14:3447241-3447380
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
CCTGGTCCTTTTCTCCTTAGGAA
3' ss Score
11.51
Exon sequences
Seq C1 exon
GAGAGCTGGCGGCCACCGGTGGAGAGCCGGGAGCGAGGGCCCTGCACTGCTTCATCTAGTGCAAACGGAGAGGGTGATTGGATAAGGTCCCTTCCTAAGAG
Seq A exon
NA
Seq C2 exon
GAATTTGTAGACTTCCTGCTAAGGCCTCAATTTGTATTTTTGAAGAACAGAAAGAAATTCTGTGAAGTGTTGAAACCATTTAAACCATCTAAGACCAAGACATACCTACTGAAACAATGCACAGTATTTGTGTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACGGAGAGGGTGATTG
R:
GGTATGTCTTGGTCTTAGATGGT
Band lengths:
148-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]