RnoALTD0005178-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100885656-100888895:-
Coord C1 exon
chr13:100888838-100888895
Coord A exon
chr13:100888435-100888837
Coord C2 exon
chr13:100885656-100885720
Length
403 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CTCTTTATTTTATCTTTTAGGCG
3' ss Score
11.06
Exon sequences
Seq C1 exon
GATGCGGAGATCTCTGCCTTTGAGCTGCAGACCATCTTGAGAAGAGTTCTAGCCAAGC
Seq A exon
GTAAGTGTCCTTTTTACAAATCCCTTATCCTACTCTTCCCGCTTTAGATGTGAGGGGACATGGGCCAACTCAGCAGCTGTGGCTAGACCATCACTCTCTGTTCCTACACCAGCATGACCTTTGCACTGCCAACACGGGAGGAACAGGATGGAGCAGACTCCGAGTGAGGTCATAATCTAGGGCAAAGGTTCCTGGGTCTAGAGATCACAGAGGAAATCCAAGTTCTTCTATGGTTGCGCTCTGTGATCTAAACCCAGTTAGACCACCCGTCTGATTACCCCCACCCCATCCAAAATAGACATACTGTGACTTCCTCTTCCCAGTGGTTAAATACTACTTTGTGAGATAACATCTAAAACTCTGCCTGCATGCTGTAAACAGAAGTTCTTATAATGACTAGCTG
Seq C2 exon
GCGAAGACATCAAGTCAGATGGCTTCAGCATCGAGACCTGTAAGATCATGGTGGACATGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-26-27,27-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
NA
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]