RnoALTD0005561-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017044 | Ccdc183
Description
coiled-coil domain containing 183 [Source:RGD Symbol;Acc:1560370]
Coordinates
chr3:2833815-2834171:-
Coord C1 exon
chr3:2834062-2834171
Coord A exon
NA
Coord C2 exon
chr3:2833815-2833925
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
GCTGCTCCTCTGGCTTACAGAAA
3' ss Score
6.93
Exon sequences
Seq C1 exon
TTCTCTCCAGAAGAAGATGAAGAACATGCTAGAGGAGGAAGAAGCAAGGCTCCGTCAGGTCCAGAACAACATGAACAAGAGCCAGCAGCTGCTGCTGGTCATCCAGACAG
Seq A exon
NA
Seq C2 exon
AAAGAAATCGCGGTATCTGACACTCTTGATGTGTATGGCAAACTGGATTATTGTGAGGGCAAGCTCATGTACCTGGCTGAGCGCACGCAAGCGCTGTCCAGAAATGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017044-14-18,15-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCAAGGCTCCGTCAG
R:
GGTACATGAGCTTGCCCTCAC
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]