RnoALTD0005872-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003927 | Cd55
Description
CD55 molecule [Source:RGD Symbol;Acc:620651]
Coordinates
chr13:47152582-47153466:-
Coord C1 exon
chr13:47153366-47153466
Coord A exon
chr13:47153073-47153365
Coord C2 exon
chr13:47152582-47152767
Length
293 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
ACCTGCTCTTATCTTCCTAGGAG
3' ss Score
10.32
Exon sequences
Seq C1 exon
GGCTATGATCCGCACGCGGGCGCCGGGGACTCGGGCACCGCCGCCGCCGCCGCTGCTGCTGTCGCTGTCGCTGCTGCTGCTGCTGCTGTCCCCGACTGTAA
Seq A exon
GCGGTGAGTACCAGAGGGGCGCGAGTTGCGACGGCGGACTGGCTGCTCGCCAGGAGGGCGCATGCTCAGCAGGCATTGTTCCCCGTAACGGGGACTCCGCTGCCAGGTGCCGGTTGCCTGCAGGAGGGATGGGTGTGGAGTGCTGGGCACCTGGGGCTGTGACTGAAGCCCCCACCCCCCGCGATCGGAGACCGTGGGGACAGCAAAAGGGATGGTCGAGTGCGAATCTCCAACCCTGCTCCTGGCTGTTCTATTCTTAAGGTGGAGGCTAGATGGCTGAACACCTGCTGCGG
Seq C2 exon
GAGACTGCGGCCCACCTCCAGACATTCCTAATGCCACGCCAAACTCGGGTAAACACACCAAGTTTGCCCACCAAAGCCAAGTGACATATTCGTGTAATAAGGGCTTCAAACAAATTCCAGACAAGCCAAACACAGTGGTCTGCCTTGAAAATGACCAATGGTCTAACTACGAAACTTTCTGTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003927-0-2,1-2,2-2,4-2-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=93.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGATCCGCACGCG
R:
TACAGAAAGTTTCGTAGTTAGACCA
Band lengths:
284-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]