RnoALTD0005873-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000003927 | Cd55
Description
CD55 molecule [Source:RGD Symbol;Acc:620651]
Coordinates
chr13:47137792-47139178:-
Coord C1 exon
chr13:47139046-47139178
Coord A exon
chr13:47138995-47139045
Coord C2 exon
chr13:47137792-47137872
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TACTTCTGCTCATATTACAGCAA
3' ss Score
5.68
Exon sequences
Seq C1 exon
AGACACAAGGTCCCAACTAAGACCCCACCAGAAGTTGATATTCCAAGTACAATGCCTCATGAATCCACCTTAATTAATTTTCCAAGTACAAGAGCCCCACTGTCTCATAAACCCACTACAGTTAAAGTTCCAG
Seq A exon
GTACAAGAGTCAAACCAACGTCTCACAAGCCCACTGAAGTTAAAGTTCCAG
Seq C2 exon
CAACACAGCATGTACCTGTTTCCAAGACAACGGTACGTCATCCAACGAGAACATCTAAAGACAGAGGAGAGTCTAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003927-11-15,12-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACTAAGACCCCACCAGA
R:
TGGAAACAGGTACATGCTGTGT
Band lengths:
146-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]