RnoALTD0006430-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013823 | Cers3
Description
ceramide synthase 3 [Source:RGD Symbol;Acc:1564356]
Coordinates
chr1:127648158-127706793:+
Coord C1 exon
chr1:127648158-127648258
Coord A exon
NA
Coord C2 exon
chr1:127706620-127706793
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTTTTCTTCATTTGTCTAGAAT
3' ss Score
7.09
Exon sequences
Seq C1 exon
TCAGCGCAGACACTCCACTCCGTGGGCCTTCCCAGAATGCATCACTGCACAGCCTGCCCCGCAGCTTTTGAAGCTGCTTCTTCTCAAGGGACTGGAAAGAG
Seq A exon
NA
Seq C2 exon
AATGTTTTACAGGTTTAGAAAATGGTTCTGGTCGGAGAGATTCTGGCTTCCTCCGACAATAAAGTGGTCAGACCTGGAAGATCATGAAGGACTGGTCTTTGTGAAAGCGTCCCACTTGTATATCACAATTCCGTATGCCCTTCTCTTACTGGTCGTCAGATACTTCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013823-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCCAGAATGCATCACT
R:
AAGCCAGAATCTCTCCGACCA
Band lengths:
125-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]